LitMiner - Literature Data Mining Tool

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LitMiner is a literature data mining tool that is based on the annotation of key terms in article abstracts followed by statistical co-citation analysis of annotated key terms in order to predict relationships. Key terms belonging to four different categories are used for the annotation process:

  • Genes: Names of genes and gene products. Gene name recognition is based on Ensembl . Synonyms and aliases are resolved.
  • Chemical Compounds: Names of chemical compounds and their respective aliases.
  • Diseases and Phenotypes: Names of diseases and phenotypes
  • Tissues and Organs: Names of tissues and organs

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